Exonerate

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Exonerate

http://www.ebi.ac.uk/~guy/exonerate/
generic tool for pairwise sequence comparison

Exonerate allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. Much of the functionality of the Wise dynamic programming suite was reimplemented in C for better efficiency. Exonerate is an intrinsic component of the building of the Ensembl genome databases, providing similarity scores between RNA and DNA sequences and thus determining splice variants and coding sequences in general.

An In-silico PCR Experiment Simulation System (see the ipcress man page) is packaged with exonerate.

This package also comes with a selection of utilities for performing simple manipulations quickly on fasta files beyond 2Gb



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Licensing

License

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Debian

Verified on

20 March 2013

Notes

License: GPL-3+

GPL-3+ This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see

<http://www.gnu.org/licenses/>.

Verified by

Debian

Verified on

20 March 2013

Notes

License: GPL-3+ GPL-3+ (see above)




Leaders and contributors

Contact(s)Role
Guy St.C. Slater contact


Resources and communication

AudienceResource typeURI
Downloadhttp://www.ebi.ac.uk/~guy/exonerate/exonerate-2.0.0.tar.gz
Debian (Ref)https://tracker.debian.org/pkg/exonerate


Software prerequisites

This entry (in part or in whole) was last reviewed on 13 February 2018.



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Date 2013-03-20
Source Debian import
Source link http://packages.debian.org/sid/exonerate

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