Flexbar

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Flexbar

https://sourceforge.net/projects/flexbar/
flexible barcode and adapter removal for sequencing platforms

Flexbar preprocesses high-throughput sequencing data efficiently. It demultiplexes barcoded runs and removes adapter sequences. Moreover, trimming and filtering features are provided. Flexbar increases mapping rates and improves genome and transcriptome assemblies. It supports next-generation sequencing data in fasta/q and csfasta/q format from Illumina, Roche 454, and the SOLiD platform.

Parameter names changed in Flexbar. Please review scripts. The recent months, default settings were optimised, several bugs were fixed and various improvements were made, e.g. revamped command- line interface, new trimming modes as well as lower time and memory requirements.





Licensing

License

Verified by

Verified on

Notes

Verified by

Debian: Andreas Tille <tille@debian.org>

Verified on

4 July 2014

Notes

License: gpl-3.0+

License

Other

Verified by

Debian: Andreas Tille <tille@debian.org>

Verified on

4 July 2014

Notes

License: bsd/3-clause

BSD/3-clause This program makes use of the SeqAn (Sequence Analysis) library. see <http://www.seqan.de/>

For a complete description of the seqan license, please visit the official BSD website

<http://opensource.org/licenses/BSD-3-Clause>




Leaders and contributors

Contact(s)Role
Johannes T. Roehr contact


Resources and communication

AudienceResource typeURI
Downloadhttps://sourceforge.net/projects/flexbar/files/
Debian (Ref)https://tracker.debian.org/pkg/flexbar


Software prerequisites

This entry (in part or in whole) was last reviewed on 13 February 2018.



Entry




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Date 2015-07-17
Source Debian
Source link http://packages.debian.org/sid/flexbar

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