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Avaneya: Viking Lander Remastered DVD
Whether you are a fan of science fiction, a space–science enthusiast, hobbyist, photographer, gamer or a patron of grass–roots libre arts and technology, you are sure to find the first successful images from the surface of Mars highly captivating. These mind blowing images were taken by NASA's Viking landers during the highly ambitious, billion–dollar mission first launched in 1975. However, many images were nearly lost to history due to magnetic tape deterioration and archaic proprietary technology. With NASA's blessing, our team developed the technology to recover many of these images. This research tool was part of the design phase of our parent project, Avaneya — our upcoming libre cerebral science fiction game for the GNU operating system set on Mars, described in the words of Richard Stallman as an exciting, pioneering project. Originally an internal research tool, overwhelming public interest compelled us to release the technology on this DVD for all. Now everyone can relive the original breathtaking experience that captured the world's attention and marked the first successful moment in history that humanity saw Mars — not as a distant, impersonal, celestial body, beheld through a telescope for centuries, but as a tangible and alien world well within its reach.
Avogadro
Avogadro is an advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers flexible high quality rendering and a powerful plugin architecture.
  • International: Translations into Chinese, French, German, Italian, Russian, Spanish, and others, with more languages to come.
  • Intuitive: Built to work easily for students and advanced researchers both.
  • Fast: Supports multi-threaded rendering and computation.
  • Extensible: Plugin architecture for developers, including rendering, interactive tools, commands, and Python scripts.
  • Flexible: Features include Open Babel import of chemical files, input generation for multiple computational chemistry packages, crystallography, and biomolecules.
Avsomat
'avsomat' is a framework for automating the scheduling of variable star observations, identification and photometry of variable stars on CCD images, and the reporting, management, and verification of results. It uses electronic charts of the star fields in which variable stars appear, and maintains a view of the current results in the form of a collection of interlinked Web pages.
BKchem
BKchem is a chemical drawing program written in Python. It is platform independent.
Bioinformatics Template Library
This library focuses on the data structures and algorithms used in bioinformatics and molecular modelling, following closely the approach of the Standard Template Library (STL) to implement efficient generic programming modules using compile time mechanisms. Although the BTL was designed with biomolecular applications in mind it contains classes of more general utility: for instance, the Matrix class could be used for matrix algebra in many contexts.
Property:Biology
Biskit
Biskit is a python library for structural bioinformatics research. It simplifies the analysis of macromolecular structures, protein complexes, and molecular dynamics trajectories and offers a platform for the rapid integration of external programs.
BlockCanvas
The BlockCanvas project provides a visual environment for creating simulation experiments, where function and data are separated. Thus, you can define your simulation algorithm by visually connecting function blocks into a data flow network, and then run it with various data sets (known as "contexts"); likewise, you can use the same context in a different functional simulation. The project provides support for plotting, function searching and inspection, and optimization. It includes a stand-alone application that demonstrates the block-canvas environment, but the same functionality can be incorporated into other applications. The BlockCanvas project relies on included libraries that allow multiple data sets using Numeric arrays to be incorporated in a Traits-based model in a way that is simple, fast, efficient, and consistent.
Blossoc
Blossoc is a linkage disequilibrium association mapping tool that attempts to build (perfect) genealogies for each site in the input, score these according to non-random clustering of affected individuals, and judge high-scoring areas as likely candidates for containing disease affecting variation. Building the local genealogy trees is based on a number of heuristics that are not guaranteed to build true trees, but have the advantage over more sophisticated methods of being extremely fast. Blossoc can therefore handle much larger data sets than more sophisticated tools, but at the cost of sacrificing some accuracy.
Bmrblib
Bmrblib is a Python API abstracting the Biological Magnetic Resonance Data Bank (BioMagResBank or BMRB) NMR-STAR format (http://www.bmrb.wisc.edu/). It allows the writing of NMR-STAR files for BMRB data deposition and the reading and easy extraction of data from files residing in the BMRB data bank, all without knowledge of the Self-Defining Text Archive and Retrieval (STAR) format.


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