Difference between revisions of "Exonerate"

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(Debian import)
 
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{{Entry
 
{{Entry
|Status=
 
|User level=
 
|Submitted by=Debian import
 
|Computer languages=C
 
 
|Name=Exonerate
 
|Name=Exonerate
|Submitted date=2013-03-20
 
 
|Short description=generic tool for pairwise sequence comparison
 
|Short description=generic tool for pairwise sequence comparison
|VCS checkout command=
 
 
|Full description=Exonerate allows you to align sequences using a many alignment
 
|Full description=Exonerate allows you to align sequences using a many alignment
 
models, using either exhaustive dynamic programming, or a variety
 
models, using either exhaustive dynamic programming, or a variety
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This package also comes with a selection of utilities for
 
This package also comes with a selection of utilities for
 
performing simple manipulations quickly on fasta files beyond 2Gb
 
performing simple manipulations quickly on fasta files beyond 2Gb
|Component programs=
 
 
|Homepage URL=http://www.ebi.ac.uk/~guy/exonerate/
 
|Homepage URL=http://www.ebi.ac.uk/~guy/exonerate/
 +
|Computer languages=C
 +
|Accepts cryptocurrency donations=No
 +
|Last review by=Bendikker
 +
|Last review date=2018/02/13
 +
|Submitted date=2013-03-20
 
|Is GNU=No
 
|Is GNU=No
}}
 
{{Import
 
|Date=2013-03-20
 
|Source=Debian import
 
|Source link=http://packages.debian.org/sid/exonerate
 
 
}}
 
}}
 
{{Project license
 
{{Project license
|License verified date=2013-03-20
+
|License=GPLv3orlater
|License verified by=Debian
 
 
|License copyright=© © 2000-2008 Guy St.C. Slater <guy AT ebi.ac.uk>
 
|License copyright=© © 2000-2008 Guy St.C. Slater <guy AT ebi.ac.uk>
 
© <guy.slater AT gmail.com>
 
© <guy.slater AT gmail.com>
 
+
|License verified by=Debian
|License=GPLv3orlater
+
|License verified date=2013-03-20
 
|License note=License: GPL-3+
 
|License note=License: GPL-3+
  
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}}
 
}}
 
{{Project license
 
{{Project license
|License verified date=2013-03-20
+
|License=GPLv3orlater
|License verified by=Debian
 
 
|License copyright=© © 2007 Steffen Moeller <moeller@debian.org>
 
|License copyright=© © 2007 Steffen Moeller <moeller@debian.org>
 
© © 2008 Charles Plessy <plessy@debian.org>
 
© © 2008 Charles Plessy <plessy@debian.org>
 
© © 2011 Andreas Tille <tille@debian.org>
 
© © 2011 Andreas Tille <tille@debian.org>
 
+
|License verified by=Debian
|License=GPLv3orlater
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|License verified date=2013-03-20
 
|License note=License: GPL-3+
 
|License note=License: GPL-3+
  
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{{Person
 
{{Person
 
|Real name=Guy St.C. Slater
 
|Real name=Guy St.C. Slater
|Resource URL=
 
 
|Role=contact
 
|Role=contact
|Email=guy AT ebi.ac.uk
+
|Email=guy@ebi.ac.uk
 +
}}
 +
{{Resource
 +
|Resource audience=Debian (Ref)
 +
|Resource URL=https://tracker.debian.org/pkg/exonerate
 
}}
 
}}
 
{{Resource
 
{{Resource
 +
|Resource kind=Download
 
|Resource URL=http://www.ebi.ac.uk/~guy/exonerate/exonerate-2.0.0.tar.gz
 
|Resource URL=http://www.ebi.ac.uk/~guy/exonerate/exonerate-2.0.0.tar.gz
|Resource kind=Download
+
}}
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{{Software category}}
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{{Featured}}
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{{Import
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|Date=2013-03-20
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|Source=Debian import
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|Source link=http://packages.debian.org/sid/exonerate
 
}}
 
}}

Latest revision as of 09:40, 13 February 2018

Reviews: 0 ... further results.

[edit]

Exonerate

http://www.ebi.ac.uk/~guy/exonerate/
generic tool for pairwise sequence comparison

Exonerate allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. Much of the functionality of the Wise dynamic programming suite was reimplemented in C for better efficiency. Exonerate is an intrinsic component of the building of the Ensembl genome databases, providing similarity scores between RNA and DNA sequences and thus determining splice variants and coding sequences in general.

An In-silico PCR Experiment Simulation System (see the ipcress man page) is packaged with exonerate.

This package also comes with a selection of utilities for performing simple manipulations quickly on fasta files beyond 2Gb



Download




Categories





Licensing

License

Verified by

Verified on

Notes

Verified by

Debian

Verified on

20 March 2013

Notes

License: GPL-3+

GPL-3+ This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see

<http://www.gnu.org/licenses/>.

Verified by

Debian

Verified on

20 March 2013

Notes

License: GPL-3+ GPL-3+ (see above)




Leaders and contributors

Contact(s)Role
Guy St.C. Slater contact


Resources and communication

AudienceResource typeURI
Downloadhttp://www.ebi.ac.uk/~guy/exonerate/exonerate-2.0.0.tar.gz
Debian (Ref)https://tracker.debian.org/pkg/exonerate


Software prerequisites

This entry (in part or in whole) was last reviewed on 13 February 2018.



Entry




Property "Submitted by" (as page type) with input value "{{{Submitted by}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.










"contact" is not in the list (Maintainer, Contributor, Developer, Sponsor, Unknown) of allowed values for the "Role" property.


"Debian (Ref)" is not in the list (General, Help, Bug Tracking, Support, Developer) of allowed values for the "Resource audience" property.








Date 2013-03-20
Source Debian import
Source link http://packages.debian.org/sid/exonerate

[[Category:]]



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