Difference between revisions of "FastQC"

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{{Entry
 
{{Entry
|Status=
 
|User level=
 
|Submitted by=Debian import
 
|Computer languages=
 
 
|Name=Fastqc
 
|Name=Fastqc
|Submitted date=2013-03-20
 
 
|Short description=quality control for high throughput sequence data
 
|Short description=quality control for high throughput sequence data
|VCS checkout command=
 
 
|Full description=FastQC aims to provide a simple way to do some quality control
 
|Full description=FastQC aims to provide a simple way to do some quality control
 
checks on raw sequence data coming from high throughput
 
checks on raw sequence data coming from high throughput
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allow automated generation of reports without    running the
 
allow automated generation of reports without    running the
 
interactive application
 
interactive application
|Component programs=
 
 
|Homepage URL=http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
 
|Homepage URL=http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
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|Accepts cryptocurrency donations=No
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|Last review by=Bendikker
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|Last review date=2018/03/07
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|Submitted date=2013-03-20
 
|Is GNU=No
 
|Is GNU=No
}}
 
{{Import
 
|Date=2013-03-20
 
|Source=Debian import
 
|Source link=http://packages.debian.org/sid/fastqc
 
 
}}
 
}}
 
{{Project license
 
{{Project license
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|License=GPLv3orlater
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|License copyright=© Simon Adrews <simon.andrews@bbsrc.ac.uk>
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|License verified by=Debian
 
|License verified date=2013-03-20
 
|License verified date=2013-03-20
|License verified by=Debian
 
|License copyright=© Simon Adrews <simon.andrews@bbsrc.ac.uk>
 
 
|License=GPLv3orlater
 
 
|License note=License: GPL-3.0+
 
|License note=License: GPL-3.0+
  
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{{Project license
 
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|License=GPLv3orlater
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|License copyright=© 2012 Steffen Moeller <moeller@debian.org>
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|License verified by=Debian
 
|License verified date=2013-03-20
 
|License verified date=2013-03-20
|License verified by=Debian
 
|License copyright=© 2012 Steffen Moeller <moeller@debian.org>
 
 
|License=GPLv3orlater
 
 
|License note=License: GPL-3.0+
 
|License note=License: GPL-3.0+
  
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{{Resource
 
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|Resource audience=Debian (Ref) (R)
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|Resource URL=https://tracker.debian.org/pkg/fastqc
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}}
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{{Resource
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|Resource kind=Download
 
|Resource URL=http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
 
|Resource URL=http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
|Resource kind=Download
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}}
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{{Software category}}
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{{Featured}}
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{{Import
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|Date=2013-03-20
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|Source=Debian import
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|Source link=http://packages.debian.org/sid/fastqc
 
}}
 
}}

Latest revision as of 12:00, 7 March 2018

Reviews: 0 ... further results.

[edit]

Fastqc

http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
quality control for high throughput sequence data

FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.

The main functions of FastQC are * Import of data from BAM, SAM or FastQ files (any variant) * Providing a quick overview to tell you in which areas there may be problems * Summary graphs and tables to quickly assess your data * Export of results to an HTML based permanent report * Offline operation to allow automated generation of reports without running the interactive application



Download




Categories





Licensing

License

Verified by

Verified on

Notes

Verified by

Debian

Verified on

20 March 2013

Notes

License: GPL-3.0+

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.

On Debian systems, the complete text of the GNU General Public License version 3 can be found in "/usr/share/common-

licenses/GPL-3".




Leaders and contributors

Resources and communication

AudienceResource typeURI
Downloadhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/
Debian (Ref) (R)https://tracker.debian.org/pkg/fastqc


Software prerequisites

This entry (in part or in whole) was last reviewed on 7 March 2018.



Entry




Property "Submitted by" (as page type) with input value "{{{Submitted by}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.









"Debian (Ref) (R)" is not in the list (General, Help, Bug Tracking, Support, Developer) of allowed values for the "Resource audience" property.








Date 2013-03-20
Source Debian import
Source link http://packages.debian.org/sid/fastqc

[[Category:]]



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