FastQC

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Fastqc

http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
quality control for high throughput sequence data

FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.

The main functions of FastQC are * Import of data from BAM, SAM or FastQ files (any variant) * Providing a quick overview to tell you in which areas there may be problems * Summary graphs and tables to quickly assess your data * Export of results to an HTML based permanent report * Offline operation to allow automated generation of reports without running the interactive application



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Licensing

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Debian

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20 March 2013

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License: GPL-3.0+

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.

On Debian systems, the complete text of the GNU General Public License version 3 can be found in "/usr/share/common-

licenses/GPL-3".




Leaders and contributors

Resources and communication

AudienceResource typeURI
Downloadhttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/
Debian (Ref) (R)https://tracker.debian.org/pkg/fastqc


Software prerequisites

This entry (in part or in whole) was last reviewed on 7 March 2018.



Entry






Date 2013-03-20
Source Debian import
Source link http://packages.debian.org/sid/fastqc

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